Tools for the Computation of Elementary Flux Patterns

Distribution

A Linux distribution including all sources can be downloaded from here. The installation procedure is described in the accompanying manual and INSTALL.txt. An older version of the tools can be downloaded from here.

Sample Data

The subsystem that has been analyzed in Kaleta et al. (2009) "Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns." can be downloaded from here. The additionally required genome-scale metabolic model of Escherichia coli, iAF1260 from the BiGG database, in SBML format can be found here.
A smaller example network is included in the examples subdirectory of the distribution.
A zipped archive of the subsystems that have been analyzed for performance measurements can be found here.